Developing Jalview

# Developing Jalview

- Basic Source Structure Guidelines
- The Applet and The Application - whats the difference ?
- Package Architecture
- Specific Development Guidelines
  - Adding new datamodel objects to Jalview
  - Adding new IO capabilities to Jalview
  - Adding new database types to Jalview
  - Working with the Jalview DAS annotation fetcher
  - Adding new analysis methods to jalview
  - Adding new web service functionality to jalview