VCF2DAG(1)

NAME

vcf2dag

SYNOPSIS

vcf2dag options []

DESCRIPTION

Modify VCF to be able to build a directed acyclic graph (DAG)

OPTIONS

    options:
        -r, --reference FILE         FASTA reference file.
    Modify the VCF file so that homozygous regions are included as REF/. calls.
    For each ref and alt allele, assign an index.  These steps are sufficient to
    enable use of the VCF as a DAG (specifically a partially-ordered graph).
    Type: transformation

EXIT VALUES

0   Success

not 0
    Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS
Erik Garrison and vcflib contributors.